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R Scripts — Sorting & Data wrangling

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Sorting & Data wrangling

Data cleaning, filtering and taxonomic sorting

standard_names(Traits, nrowTraits, source=163, dim=NA)

Standardise species names across datasets by removing duplicates and mismatches.

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addToPhylo(phylogenyTraits, GROUPTraits)

Prune a phylogeny to the set of species present in a trait data frame.

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RedToTraits(IUCNGROUPtoTraits)

Merge IUCN Red List threat category into a trait data frame by matching species names.

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imputation_trait(GROUPData, selectedTraits, shortnames)

Wrapper around missForest to impute missing trait values for a taxonomic group.

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filter_completeness()

Remove species below a completeness threshold

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merge_by_species()

Robust species-level merge across datasets

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pivot_long()

Convert wide trait matrix to long format

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